Scaffold Ga0211585_10228932

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211585_10228932

Scaffold Ga0211585_10228932

Overview

Basic Information
Taxon OID	3300020477 Open in IMG/M
Scaffold ID	Ga0211585_10228932 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1154
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_125
Coordinates	Lat. (^o)	-8.9103	Long. (^o)	-142.5767	Alt. (m)		Depth (m)	140
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F007609	Metagenome / Metatranscriptome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_102289322	F007609	N/A	MITLENISTGEVYEGQELEYFVDDDTLIGEVYLDGNLIFQALDVHNDEQLEHALKLDFKLLKEAEDIFSDFTE
Ga0211585_102289325	F005364	GGA	MKNKDLINRLKGLVKEEVKSVLSERAYKYGGLLDPEKFDPVDPEVHIVGFGTMARSSLRTEIATRIEGALKTAQDAAVGGPNSFDKYKSLEGVFEDKGVLMLQIKAEI

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