Scaffold Ga0211585_10114415

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10114415
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1819
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051452	Metagenome	144	Y
F076484	Metagenome	118	Y
F083236	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_101144154	F083236	N/A	MVIHIGDLVRLSGKTRHGKNRIREHGDLAEVCHIDGVLNAIHKFCVIHKHGDSWRWIDLPNDEHMNWEMVEKNDKCHFDNFQ
Ga0211585_101144155	F051452	GGAG	MHNDVKTKLIRNGMNRAMSSKGKTFIWNPKSKFHVKRKIKEVRLTFGGNVELTFFHPLPSKRSRLFTIVPTWECMEDFCIVE
Ga0211585_101144156	F076484	GAG	MDIELIGWFDASMSDEEIVDFIEELEAEEEARIELADMARDGWR