Scaffold Ga0211585_10061382

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10061382
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2712
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F012279	Metagenome / Metatranscriptome	282	Y
F016675	Metagenome / Metatranscriptome	245	Y
F022974	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_100613822	F016675	N/A	MRKFEVDYETTLPPWHTGHEKVEADDLDSVKEKFDRKHEAARIYKITEVLYDQRLVAS
Ga0211585_100613826	F012279	N/A	MIMTERERVEGMLIENRLSDLKGIMKTLEAAETAVGHLRDRKWELVEELKELGHDFTATTEGMNVVLSASPSMRF
Ga0211585_100613827	F000615	GAG	MCRIRCFYEGFDGKLSWAEIVMSYEDDIAGMVKHWSCGGKRMVTTEHIEMV
Ga0211585_100613828	F022974	N/A	MENNETYYIARLTKKGKFLSSEIFETLESARLWAMKETKLLVSDTFLRKCKADDIVVEIDKYFLAYELDSEELFKNGIKVA