Scaffold Ga0211585_10043499

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10043499
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3383
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F032033	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_1004349911	F000379	AGGAG	MQKIDYTNKHGIMVGYIDNSQNVVAVETGWKTTPEALTGVLMSQYNSKEMAQELVDSPTLMPTFKKDDYWYVDGFGDVIESNLSWNKEEMRKNVGHLFLFMKGTWQYSDNGIDWEPAVECFKEIA
Ga0211585_100434997	F032033	GGA	MERLWEKDYGPFRVFGYVAPEEMDVEEVFDDDASKLNMFHLKQDIAYGKKVWVYATARVFCKGVELGDASIGGLLYKDYDGIKKEIFDEDTHDIVHDALKIARASLNYLKDVKAPPREQLTSQFMEGQVW