Scaffold Ga0211585_10041779

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10041779
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3472
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F032033	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_100417791	F032033	GGA	MERIWEKDYGPFRAFGYVAPEEIDVGEIFEHGADVVDEIRDDINNGDKVWVWAQVKVYCKGIELGDASMGGLLYKDYDGIKKEVFEEDTHDIVHEALKGARASMKYLREVKIPSQEQLTSQFMEGQVW
Ga0211585_100417795	F000379	AGGAG	MQKIDYKNKHGIMVGYIDNSQNVVAVETGWKTTPEALTGVLMSQYNSKEMAKELVDSPTLMPTFMKDDYWYVDGFGDVIESNLSWNKDEMRKNVGHLFLFMKGTWQYSDNGIDWVPAVEEFKEIA