NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10025664

Scaffold Ga0211585_10025664


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10025664 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4764
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021867Metagenome217N
F038421Metagenome166N
F056907Metagenome137N
F074138Metagenome120N
F087314Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0211585_100256642F038421GAGGLTNLNFYDDEESVFKYCPKIEKICAFCGETNWNPMTDEITDEPVLFCGASTGYETRVSPLPECWLNMEPAMRTKYRKQKRAEYEALNPKKLDYKVIGTKIYKKSY
Ga0211585_100256643F087314AGGAGMAFEHKENTATVFTNDKKTADNQPDYTGRGKVGDALMDFAMWKRQSKSGNTYYYMSFKEPSEKFGSKGKTKPAF
Ga0211585_100256646F074138AGGAGLIDWNKLYIHPSDDTTDDDIRDFIEWVSRKAERLGFRVELKRHEKSGAGSTDALSHNPLDKSDETY
Ga0211585_100256647F056907N/AVPDNAYYIPNESSGGPKLPSGKHKAIIVALDVSENIKCGGFIADIFKPVYRVVDSEYANADVKDNGVFRYKDKPGYNFEASRNWGFAKFCTILGLDKKQDGKITLPYLEIDMIDGVKVLIEVSYKSFVNDSGKPVRYPIALLKTKLGDVPF
Ga0211585_100256648F021867GAGGMEKNENVDWDKVNRGKVRYGFALELYKKGGILKPSELGRIEAFVEYVMNGDEDDPTVIEAPVSRLMPSEECKQAIKTETEGSKAFVKAMVHIDAEGLKEKDLDRVLGALDDGKITMDNLQDSLDRIASIKKSYK
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