Scaffold Ga0211585_10009425

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10009425
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9222
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013236	Metagenome / Metatranscriptome	273	Y
F022083	Metagenome / Metatranscriptome	216	Y
F089036	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_1000942510	F089036	GAG	MKKIDLQGAILAGIGTLIVGLTGWLMTTTLDVDKDQDVMEVRLGHAEENYDKLRLDSPNHSMDTCPVCMHMKLGSK
Ga0211585_1000942511	F022083	AGGA	VSEPISDKSSLNISLPMLLQAIFFIASMVYGYGQLNTRISFLEHQANTNERSIKEMKAMQDLPIPSDVRQDEKIKRIEEEILRLRDGERN
Ga0211585_1000942518	F013236	GAGG	MIEWIQSNWTSVVGAVAVAGGALYIPFVRGLVLTGVKTMVSEKVLKKIAVQMVGKLVKSTKNKLDDVWFAEFKKKVDDA