Scaffold Ga0211585_10002909

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211585_10002909

Scaffold Ga0211585_10002909

Overview

Basic Information
Taxon OID	3300020477 Open in IMG/M
Scaffold ID	Ga0211585_10002909 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	20162
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (93.88%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_125
Coordinates	Lat. (^o)	-8.9103	Long. (^o)	-142.5767	Alt. (m)		Depth (m)	140
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089042	Metagenome	109	N
F092098	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_1000290910	F089042	AGGA	MPEEKPLHEIGLEELILVTGSFIFAGNKLEDVDTDVIMKLMELADNELEYRATGIPKDTQIH
Ga0211585_1000290940	F092098	GAGG	MKINIEIDTGNSAFWNYDEDDNPQFYYGEVERILKNILPRLEIDDYGKSNDINGNTVATFTVEREREEI

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