NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10002410

Scaffold Ga0211585_10002410


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10002410 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22724
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024572Metagenome205Y
F054926Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0211585_1000241011F054926GGCGGMDRRLTKTEADQFATMVMSGAPVAEVVRYFWDVEMPEEVLLLCEERWPQQKEVQAALRKAMGNEPWHKMTDEQRLDVSLKKHYNEMAYFLWTTNYAECEGGEKLKSDTCRQSIEAKVAGMAGKESPLASFYHDLLQRYEQQGKAN
Ga0211585_100024109F024572GGAMASATAPPLLRDRLMTEFRRFLCKKTEFVPFEHQAAWWVTTDGYELTDIVLDPDDEGPSIEVRLPSGDVVTRSLVPRDTGRAKVVAELGAYKSGKSAGAGIWAAAFAAVPNALVYLVGNEYDMTAPEFEYLLEALCSERGLNQKPKSLQNRPKDGRLWLELDNGCRFEARSWERSESLKGKEVDAYIYCEAYQLPGIECFTSVAQNLRVRQGYAVFPTTPDRPWVQVFHDHGHGDPDFPSWVCKCGVPAMVNPYSFDQAAMDRDEQLLTREQFSIAYLGKLGDYVGRVYNYHRGDRQISLTDHPTVWVNTKIEPTMSNFRLPSDWRVEIGADTGTYCAALAVAISPEGNAFVIDEVTNYRYVANTPELDENSSIVRWADEVKAMARRWKTRPIAWVDSNSQFKQECLHHGVHLMANKRGREVRTEAARQYFQHEQIYLAPWLSMLPYEVENAQWPDHTTAAGRYERYKVNDHVLDCLEHVLSRHPRAKTQEEKPDMAPHFGSVQWFGSPFRKRAKSSPPDSHLGRL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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