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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020477 Open in IMG/M |
| Scaffold ID | Ga0211585_10001758 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28693 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (91.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_125 | |||||||
| Coordinates | Lat. (o) | -8.9103 | Long. (o) | -142.5767 | Alt. (m) | Depth (m) | 140 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003481 | Metagenome | 484 | Y |
| F006447 | Metagenome / Metatranscriptome | 373 | Y |
| F019988 | Metagenome / Metatranscriptome | 226 | Y |
| F050300 | Metagenome | 145 | Y |
| F085546 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211585_1000175822 | F019988 | N/A | MAIEKHTIKVSTTGSSGSATGSLVTALPYCELLAVRMDFHASAPGTTDTTLSSPGGPVSVTLLTVTNSATDAWFYPTHQLDDSSGSAITGAYIPAIVHGNLLTELAGCDALTDALVMTIWVRV |
| Ga0211585_1000175827 | F050300 | GGAG | MPGTRKKKQDADGTSNEVWYLALHKLHMVQGPGTKPSSIRFYPGQRFTLDGDEPVDIDSLLRTGAVKLYEESDEEWAQAQLAGRPQPRRRRRNNG |
| Ga0211585_1000175832 | F085546 | GAGG | LPSQVEDEDWATIRNIMEFRLLRSARDQHNQDASKLDPAQVEIWKEMVEAVESNG |
| Ga0211585_100017587 | F003481 | N/A | MAEEDDIQNQLKEAQEELARLQALSKESDKSNRVQMTSGDIVKLIVACPVVFTWLFLGSRIIISATTSQHVLDNVEPLLTVLSILTIPVTGILQNLFSVSGDKK |
| Ga0211585_100017588 | F006447 | GGGGG | MSLFEKLAALIGNRQVPSLAVPSLPRYRISFANSAVVKIVVFAIVLSGLAVAIGMYFAVKDVVSSTYNWPEPATYHVTADGLQTMGEKNPNMEDGTESQTLSIRLADGARISTLRIKDTDVGRTGIARSLDISPYTSAVTGTQAYLWVGNMTVTNSSFPTLAWQNSEVGTLTTGMLCDGHTMSATVSNTVSDLELSSERQSSVYEVDGSVVDRVQLHITGNTGAYVQNLVIDNLDAWSGQAFFDRMKIGTVTIDNSNRIGDGSGVDSASCVINPSVSARVINNTMQDRPITVR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |