Scaffold Ga0211585_10001084

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10001084
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39425
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.87%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024886	Metagenome / Metatranscriptome	204	Y
F025477	Metagenome	201	Y
F028516	Metagenome	191	Y
F041433	Metagenome / Metatranscriptome	160	Y
F047903	Metagenome / Metatranscriptome	149	Y
F052610	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_1000108416	F024886	N/A	MKFKHDVMFRVQVTVNGKQEYLINTSDYDHLCDKLTDVYIKESI
Ga0211585_1000108418	F041433	N/A	MTQREFTKLSKALDYMAKDTMKSKGPEYTQEDKDILANFKNTASRLNTTELKVWGAFFDKQISSIYAHLNNANLKKAESIESRFADIINYCHLGLALFKERSR
Ga0211585_1000108421	F028516	N/A	MLYNKLKPEIKRRLHRNSNRYALSIESIMNTLKTKRYYNDLTIGEIKQLRAFGDVMSTDVLWGESMFDNLNKL
Ga0211585_1000108422	F052610	N/A	MKTIKFLPNNNILLNNKTLLTKINYTNEHTKWYTIKGDNYVEI
Ga0211585_1000108425	F025477	N/A	MANYKAYQSIKLGENTTEKDLYELFGDTIETRDHNGKVIPNYLKNKYSGRNGMWNEKVYKWKK
Ga0211585_1000108447	F047903	N/A	MALKGSYDYKGITVSDAYVKITGVNWTCNSNSENYVKTAAVYNSDGTVKTPQVDDTRWVQTTVGNWHANVYKDKAARDANPHDQICSVSGSFDMDLKDSAKNPVKQAYVAAKTVDTYKSMADA