Scaffold Ga0211585_10000273

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211585_10000273

Scaffold Ga0211585_10000273

Overview

Basic Information
Taxon OID	3300020477 Open in IMG/M
Scaffold ID	Ga0211585_10000273 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	95809
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	72 (94.74%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_125
Coordinates	Lat. (^o)	-8.9103	Long. (^o)	-142.5767	Alt. (m)		Depth (m)	140
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024570	Metagenome	205	Y
F079193	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_100002732	F024570	AGGA	MNYVAYETRMAKDTPTGMRYLVRCNHTNKWAICSWVGSTGAAIGNPECQGKYEYVMRKWHKLVGKYVSVT
Ga0211585_100002737	F079193	AGGA	MKTEAVKTIFQADDYGMEDHSLTIDKISELDPEGNVVLVKLIAYVIDPIGNAMVFNYSPYAKLSELLNSAKVWIQCGCPSDCDAMGFPRKWDEASLHEWVAS

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