NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10000044

Scaffold Ga0211585_10000044


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10000044 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)242646
Total Scaffold Genes328 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)204 (62.20%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043417Metagenome / Metatranscriptome156Y
F071749Metagenome / Metatranscriptome122Y
F093943Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211585_10000044104F093943N/AMFKNIAYKLANLIGGNIKMARTKQYVVYTREFVKGNVKNKVGVFLDEAKNSLDAKGNVNGGVIKYKNLKMKRTTPTTNLINKGYDFSVRVIGTGNYQVAKGMKNSVIALLQDNGKTLINKVA
Ga0211585_1000004430F043417GAGGMQKQKYTKEEIEAGVKFLQNANVNFDYDKDDMQINFSIDVGCRIWTDGSSIWSRGVVKGVKVSSLSLTATHSKDMYDKKDWASLKDEDLYWSGGLTGYAFYDGSGKDGTWYDGVDDESALINRNTSKHSDGLIYTDDGFVKNLIKYLRDECSFDTSFTDLTKFLDFSYSEQGMQDMETVNFDVEMDGDFWIKCNDELVKFLHNKKVA
Ga0211585_100000449F071749AGGAGMLVFTPLDIPPIPNKQKIIDNFVGAEKYVWWKEETLLGTKDFSQPLGDMKPWNDFAKQKYPELLEWIDTYFPFEHKFYVRLARSTGNVAPHVDGNKTEAPYKHHMTITQEMLDHQMSNEPIGYRFIVTGSRDTLYMCNEYDYSKDMSKQPKHFCNIPEDTDAFLINNCTQPHGVDVKEGIDDDRIVGFIAGKVVESAHQKLIEASTNKYATNKVYKNELRI
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