Scaffold Ga0211585

Basic Information
Taxon OID	3300020477 Open in IMG/M
Scaffold ID	Ga0211585_10000017 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020477 Open in IMG/M

Scaffold ID

Ga0211585_10000017 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	328149
Total Scaffold Genes	461 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	307 (66.59%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

328149

Total Scaffold Genes

461 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

307 (66.59%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_125
Coordinates	Lat. (^o)	-8.9103	Long. (^o)	-142.5767	Alt. (m)	Depth (m)	140
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_125

Coordinates

Lat. (^o)

-8.9103

Long. (^o)

-142.5767

Alt. (m)

Depth (m)

140

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043417	Metagenome / Metatranscriptome	156	Y
F060032	Metagenome / Metatranscriptome	133	N
F071749	Metagenome / Metatranscriptome	122	Y
F078577	Metagenome / Metatranscriptome	116	Y
F096775	Metagenome / Metatranscriptome	104	Y
F105321	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_10000017133	F071749	AGAAGG	MIVFTPLDIPPIPNKQSILDNFIGNEKFAWWKEETLLGIKDLSKPFGEPKEWTSNAKEKYPQLVEWIDTYFPFEYKFYVRIARSTGNVDPHVDGNYVKAPHPHHMTITQEMFDHQRANEPIGYRFVVSGSRNTLYMCNDYNYSKDMSNQPKHFCTIPNETDAFLINNCTQPHGVDVKPNIDDDRIVGFILGKVVPEAHQKLIERSQNKYSKQVVKKDELRI
Ga0211585_10000017202	F043417	AGGA	MAKYTLAEVQAGIKFLQNANVNYEYDKDDETLRFDVNVNKRIWTSGDSIWSKGVVKGVKVSNLVLMAQHSRQMYDKKDWSTMNADDIYWSGGLTGNAYYDGSGKDGTWYDGVDDPSALINRNPSKESDGLIYTDDGFTENLLKYMEEECNFNRKLLEKYLDFEYSEQGMQAEETVNYDVNLDGDFWQHCASELVKFTATKVA
Ga0211585_10000017226	F096775	N/A	MELLIKAIIGGIIIATVSTIGGRYPTVGAFVLGIPLATFVSFIFMHYAGVDIQTFKLISIQTVYFVLVSLLFFPVFIYMISTHGFWISMLVSVLITGTLMMCLFKYIQ
Ga0211585_10000017267	F060032	AGGAG	MSEFRILYYDLETKDIIKIIREVDSKLNDPYFEITYDEIKDFIDGTKVPSQYYIELNPKDPNDFTIKKKEIHLNIREIDKTLHKIRIGTDDDVSYDIRVVHNKKDKTISFEFNPTLKSYMASKYQLTGKTQKFTNPEMLVINGTSILNFFITQTGDPHDLFASYYVPVVQLLTEDKLVAGYKGELNTCNVYTRRIYDDYLMVEK
Ga0211585_10000017272	F105321	N/A	MQNGLSIGVIGHMMEHKNLAICGCSWASDFNSSTYSNDEVTNNSQLWQYNLGYKPTIYARPGATNLKIYTQVDEAIENGFDSCLVLLTSPTRINIAWKDTDGWKADSKFRWGRTDVVNKYATSEIKEYIGKYFNEEIEVLNSFIITEAIYYKLKETGKPFYIFTNAFTDYIHKDWKVFNKKEIIQDGPINLIKDNNYVGDNVPNHLSLLGQDKAKKLVIATIYP
Ga0211585_1000001796	F078577	GAG	MSNVYYKVTVTKNDMECTLYWWEKTYKKLMESVDLLYKCAKVDAVELEMVTKEEYDENFV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211585_10000017

Overview

Ecosystem & Geography

Associated Families

Sequences