Scaffold Ga0211715_10090853

Overview

Basic Information

• Taxon OID: 3300020476
• Scaffold ID: Ga0211715_10090853
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1485
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_148b
• Coordinates
  • Lat. (^o): 33.9044
  • Long. (^o): -56.7834
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007697	Metagenome	346	N
F016883	Metagenome	244	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211715_100908531	F007697	N/A	VMETIAQQVKNIPDCVETVVGIAGSGLSMLGVALGCKLYNKNVKTIHPVALSSYVYKNKKMWYDRLAKPAKFDGDFKVVQSEYPYQHKLKLDESLPLDQTYEAKAWDWMVKNLEPSEKVLFWDVGIKEYDLDYIEPIKWHKSEYEMIIDREVRRKSKVTKHDFF
Ga0211715_100908532	F016883	AGG	MTFSKAWLEKKIMCGLCNFGCCNHPSFHVEITEDEQEFYQKEYGLDLELEWNQDGCCDLLKDDNTGCSLGDDRPVFCKLYPLVENKSNRLVMNNWAYLHCPKPDNYELDKVVDGKYHYKLKKKHKNKRDELILDDKIENVVKQIWLQAKNSIIQRYGQEYYEKIKTEMKQTIKHEFF