Scaffold Ga0211715_10003289

Overview

Basic Information

• Taxon OID: 3300020476
• Scaffold ID: Ga0211715_10003289
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10202
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_148b
• Coordinates
  • Lat. (^o): 33.9044
  • Long. (^o): -56.7834
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F013228	Metagenome / Metatranscriptome	273	Y
F015481	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211715_1000328916	F013228	AGGAG	MAIGIQSDGSVLETTVSVKSGRKKLYDNKAKVVEGFREKHIKVDLVDEDDHYFKLNWDGEKYVGNFFGTTLTCNYEVTRDFKADISAPNRNESGPTVYAKRSSGGRPDRYK
Ga0211715_100032894	F015481	GAG	MDEVEKRFACDECGHSFVMECEEDMIPKFCPFCSQPVFVTDETRIEWDEDNDHYPFGD
Ga0211715_100032899	F004418	GAG	MLSWLKDDWQNNRFRLFCETIGSLCFISIYVLMAWYGDAVSVFTIFLVQIVGSSLHIINAYLRNSVNLIVLNVIVIAIAIFGIGRMFL