Scaffold Ga0211715

Basic Information
Taxon OID	3300020476 Open in IMG/M
Scaffold ID	Ga0211715_10002380 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020476 Open in IMG/M

Scaffold ID

Ga0211715_10002380 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12374
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (86.96%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

12374

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (86.96%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_148b
Coordinates	Lat. (^o)	33.9044	Long. (^o)	-56.7834	Alt. (m)	Depth (m)	250
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_148b

Coordinates

Lat. (^o)

33.9044

Long. (^o)

-56.7834

Alt. (m)

Depth (m)

250

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007004	Metagenome / Metatranscriptome	360	Y
F007121	Metagenome / Metatranscriptome	357	Y
F009987	Metagenome / Metatranscriptome	310	Y
F010942	Metagenome / Metatranscriptome	297	Y
F011446	Metagenome / Metatranscriptome	291	Y
F012162	Metagenome / Metatranscriptome	283	Y
F021857	Metagenome / Metatranscriptome	217	Y
F025588	Metagenome / Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211715_1000238011	F007121	N/A	MFKTILLTIFLFFGFTTKVYGDTGEWQIVLQGQLQEPGLDKLIEWVPEEVPRTVTFYFDTDSDGKYDIKIAYSLIEAYACDKQRNCVNRITDKGDHWLLPAPGINYYVVKKWIVYRYVDDKEWRGEHKTQQWIFEYPLHEDWDKHRFQKLWPDR
Ga0211715_1000238015	F009987	GGAG	MLSLIGNALGLGLKIMDKMEKNSDKHSFEEFKARKKEMDNSLADGDVNGIDSMFEYLAERARAGKTGRKE
Ga0211715_1000238017	F007004	GGA	MKNILIGLSLMLCVGCQTSNAYQKPTVRIVGEAQMKKLDNGNYEVTPRWIKDRFDAENSMLKQLEDCREGK
Ga0211715_1000238018	F010942	GAGG	MADQSRESEKQILLLEKDIQHLNYVIKELEKECDFVKKHFTKKNTERLDEIKIIHGRIDQHLQTDIDFHDNVRKKISDRFSQFEDRVRQLERWKWATWGALIIVGTLITYFIPVPKVITNSLL
Ga0211715_1000238021	F012162	AGGAGG	MLLSEQQTKFYLDEMINHYGEKENNTKGNFSWQRSEAEYRRKAFQDMRMVLFGDDDNGYKRTENT
Ga0211715_100023803	F021857	GAG	MTITDNEFRPISRFCAICDSQFRWQCTCPNNRVMAKQKEQSFKSGKRHKGKKALEYCMQPEEEKDENF
Ga0211715_100023806	F025588	GAGG	MKTYSKFKKELNEDGMMNGDDGGEAPATQVFYSPNDSEIKTSADKTMTVPKYRLSEDEKGCNQTCSHWRDQTWCNEYKFKCDPDYVCDSWKSSGI
Ga0211715_100023807	F011446	AGGAG	MEAMVLGWAQTQSWWGIATTVIVIANGITMTLRDKYAESIPIIGKIWPILNWLSLNIANNKNEDK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211715_10002380

Overview

Ecosystem & Geography

Associated Families

Sequences