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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020476 Open in IMG/M |
| Scaffold ID | Ga0211715_10001280 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17321 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (53.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_148b | |||||||
| Coordinates | Lat. (o) | 33.9044 | Long. (o) | -56.7834 | Alt. (m) | Depth (m) | 250 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001066 | Metagenome / Metatranscriptome | 788 | Y |
| F054103 | Metagenome / Metatranscriptome | 140 | Y |
| F077769 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211715_1000128018 | F077769 | N/A | MGSNITAKFDGQCKICGSAWAVGDQICYQKNPKAICSDKECFTQQGGTISVWTGKSTVNNRDIIITRLPEVDVGDSVKQVADTLQQYIVVAHHLTKSLYPEQDVNTHVFGQIRSKIVDQLLYCTDIQKE |
| Ga0211715_100012806 | F054103 | GAG | LKIYFNANNKAHLEALKTCGVKNVMLSFRYSYANIKKFRREFDSIFVVAGTNSDPDEYHDFLKRSREYYDYATQFDVFYNMKDTNNYLKKEREMGIDWTIPVLQENYLNHLSILRPEPDSYVCLGEVHGKLETEDQIRKLPRNIRYHGLAKGKYLEKRLFDSLDTSGWISAAMTKKCEIWNGSTTYSMFFGDKGKAMKAQQQHALEVYKDNLEELGIKKDDVLNGEYYSLLKVPFALLYKPMCKRLNIYKENFIN |
| Ga0211715_100012807 | F001066 | N/A | MDDEIFKIKPIGKINTVVENKRKTVSVYNRAKNFKYANLPAYCDQCVYRSIDSGGNGKCPKYEEGAICGIREDFLKVINELDTRNPEDVKGILDMIAKLSFENVLMALTQAKMDGNIPDRNTKSEINTLLNVIKSINDLNSKLVMTEETKMNKQGDIESIFKQIRAQRSG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |