Scaffold Ga0211715

Basic Information
Taxon OID	3300020476 Open in IMG/M
Scaffold ID	Ga0211715_10000609 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020476 Open in IMG/M

Scaffold ID

Ga0211715_10000609 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26884
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (56.41%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

26884

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (56.41%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_148b
Coordinates	Lat. (^o)	33.9044	Long. (^o)	-56.7834	Alt. (m)	Depth (m)	250
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_148b

Coordinates

Lat. (^o)

33.9044

Long. (^o)

-56.7834

Alt. (m)

Depth (m)

250

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F043442	Metagenome	156	Y
F064085	Metagenome	129	Y
F077769	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211715_1000060924	F077769	N/A	MGTKIKAKYDGACKFCGEEWIVGDDLYYQKNPKAICSDEPCFNQQGGVVKSFTYKKDDVIITKIPDIDVGDSVKQVAEMLQQYVVVAHHLTKSMYPELDVNTHTFGQIRSKIIDQLQYATFLSRSGQD
Ga0211715_1000060933	F001066	N/A	MSDEDIFKIKPLDKHASKVQLDGRKAFSPFNSAKHLKTANIPAECDQCVYRSIDAGGNGKCPKYEKGALCAIRKDFVAMINQLDTRDPKHVKTMLDMLAKLSFENVLMALYESKMDGNIPDRNTKSEVNTLLKIISTIGEISNKIEVSETTTLNKKGDIESIFRQIKANKKGE
Ga0211715_1000060934	F043442	AGGAG	MKIFFNGNNKAHMEALEQCKVKNVMLSFKYSYANITKFRNIFDEIFVVAGTKTEPDRYHELLKKHKENYDYATQFDVYYNMDETLKHYKKEKDMGIDWTLPVLQENYLHHLSKLRLEPNSYVCLGEVHGRAETEDQIRKLPANLKFHGLAKGRYITQTRQFESLDTSGWISAAMSKKCEIWNNNSTTVMYFGEKGKGMIPMLNHACEIHKEFLEIIGVKKEDILDGEYYALLKAPFALNYMPLCKQYGILEDNFNL
Ga0211715_1000060936	F064085	AGGAG	MADLKVVASGICEECGHSQKDHEGNTVCDVEDCDCTNIGSY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211715_10000609

Overview

Ecosystem & Geography

Associated Families

Sequences