Scaffold Ga0211541_10080634

Overview

Basic Information

• Taxon OID: 3300020475
• Scaffold ID: Ga0211541_10080634
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1613
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_152
• Coordinates
  • Lat. (^o): 43.7738
  • Long. (^o): -16.9097
  • Depth (m): 5 to 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002215	Metagenome / Metatranscriptome	582	Y
F007475	Metagenome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211541_100806341	F002215	N/A	CAYHYNKSMEPQVIAAIISGSIGAFAGISRALGNFNKKLDRKFDKIQREVDDLKNSVIHDYVLKEDFLREMQGVHTKLDRILDHLLNHTN
Ga0211541_100806343	F007475	N/A	MWSLVHDEGNEPLKLAAKYSQSGVNITVNFEEHNLNKNDKIQLNFTSGNAISGEYTITDVPDPNSFVVIYPFDETTSGYVTVENLKKHEYVGAWLLEPSDKPVGKGLESWERNWRKEQEKLKESAEIFALYNRSTKWEGNKEIIGNFNNKQKVANFDPSVVAMTLTDSLKRDSQGELDRSGKSLNTTNRMIAMVNKLFNKSPTVLDDVKFGIINKPLIEFTDIFESGLINSGDYINGEFVDSSENTSNLDASTYNPDTNQDTVVDAGLYVNVES