NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211541_10037700

Scaffold Ga0211541_10037700


Overview

Basic Information
Taxon OID3300020475 Open in IMG/M
Scaffold IDGa0211541_10037700 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2443
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_152
CoordinatesLat. (o)43.7738Long. (o)-16.9097Alt. (m)Depth (m)5 to 160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017558Metagenome / Metatranscriptome240Y
F035490Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0211541_100377002F017558AGGMFFIIFKNKNNILTSYTNTLFSTEAEATDYAKRSLKKKDVWQVVRYDSENYDKYWYKT
Ga0211541_100377003F035490GAGMNKIKLSERKWVTKGKKHKAFTFTHYENAKDENGKTFRKKITKSSPNARWLEKYAEKTLLRIGNINPKNMSIVLEIPLDYAWGVYTKKCKNRINEPTLKRKLTKTTFKEYKEHFKHIKKHCGNIDLTKIDVSYIADFLKKIDDLKIDYKKKIFHTFSRIYDTQVGMGETDPLKINVFKTATFFKDDEKTVKKAHPKIDFDVWNFDRIKTIIEQIPLIPYQLMFKLMAETSCRPSEARAAQRKNFHFIRNIPVFEVTNSVDYEKNLAPPKSAAGYRELEISVSLKDQLIDYMNTIPEDQECIFLNSKGNFYDLSNMIDALDKSVKSLNLKLPVARKCYFFRHWNVSYWCYQGKYTNPFDLATHMGDEDIRFINKNYIKKYSISKETVKYSEHQNNNYKWN
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