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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020475 Open in IMG/M |
| Scaffold ID | Ga0211541_10023300 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3159 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_152 | |||||||
| Coordinates | Lat. (o) | 43.7738 | Long. (o) | -16.9097 | Alt. (m) | Depth (m) | 5 to 160 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019562 | Metagenome / Metatranscriptome | 229 | N |
| F028183 | Metagenome / Metatranscriptome | 192 | N |
| F101216 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211541_100233001 | F101216 | N/A | ALTVHPLSIVPNTPFSDPEYKNKYGFKYTKTAAPAGGNTYPKDSNGETDYVAYESKSYSKQDYIDMYFFAKGLVIPHHYHGVSQVAATYLNREHNVPFIDFYKKLFEYSRNGNGILNEEYKNHTNSLKQSLFEDRTWGRTIEGGDDFHIQDNGATASFLYKNIDKVHKEVIDICKKEYNVDVSEACQFNKHIIDTYERDDIEKQFDKNWYSWFYDNKPLVSVNNIVSVTVYKYKDIVDHSKHLFWWGRKAKRCFLKSKEITL |
| Ga0211541_100233003 | F028183 | AGG | LEETRSAPYCRELKSLWYDREYLLNHLENIDDNNWYLFDCGHIRWTVQEAFNARRECKNYPFSEFHYELINLFTPAISFDTVLYTQTAIGGAPPHQDRNRPTALNFAIRGEFSDTSPQVFYDSFDRSTEKYRMTYEKNDITNEFAPWIFKGPEIHGVENKTEKNRIIITCAWRHNSYEDIEKRLLDGTLVNWEQNEKNKRIKFI |
| Ga0211541_100233005 | F019562 | AGG | MWYHKKFKLQYDTNVFNEIIEYAERATWRQGYDQNGLLWNVEELPLNPKQFPILNELYEGLNTEFKRPSFFISNVKPGGLVNHIDHNKWGNLGIPLKGDFKNTPQYFYDQFNHPVESFVVDSPVIFNTRMVHAVPRQLTDTGPRWVLMMDLFEWVDKLFDKIDKKTIWTDTKNFKNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |