NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211547_10667393

Scaffold Ga0211547_10667393


Overview

Basic Information
Taxon OID3300020474 Open in IMG/M
Scaffold IDGa0211547_10667393 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_151
CoordinatesLat. (o)36.139Long. (o)-28.9598Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033766Metagenome176Y
F036656Metagenome / Metatranscriptome169Y
F085551Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0211547_106673931F085551GGAGGMSYSIRTRLHHWIEQCPCTNFLVKNKKEQEQVDGVWYDVVVVECLVKAEDQKP
Ga0211547_106673932F033766AGGGGGMSDYPYSLNAIATHLRELSLSIAKKLDISEDDAWDLCMEKLESKFLRMKREDDQ
Ga0211547_106673933F036656N/ALKGACIFLSDEDEGRYIKDVCVDLEKHSIILIDDEGNGMYWESLRNASIQFQGGR

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