Scaffold Ga0211547_10102191

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211547_10102191

Scaffold Ga0211547_10102191

Overview

Basic Information
Taxon OID	3300020474 Open in IMG/M
Scaffold ID	Ga0211547_10102191 Open in IMG/M
Source Dataset Name	Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1503
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_151
Coordinates	Lat. (^o)	36.139	Long. (^o)	-28.9598	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025414	Metagenome	202	Y
F037480	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211547_101021913	F025414	AGGAG	MQVGSLVRETMDGNVGVILAWENDGWLVSFPKHGMVFHMLPKLLEVVDESR
Ga0211547_101021915	F037480	GGAGG	VQVGDLVHMPGSIEPTTGIILRKKSDGEKHGLGRVQVYWIEDGEASWEPKKWLEVISASR

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