NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211547_10102191

Scaffold Ga0211547_10102191


Overview

Basic Information
Taxon OID3300020474 Open in IMG/M
Scaffold IDGa0211547_10102191 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1503
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_151
CoordinatesLat. (o)36.139Long. (o)-28.9598Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025414Metagenome202Y
F037480Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0211547_101021913F025414AGGAGMQVGSLVRETMDGNVGVILAWENDGWLVSFPKHGMVFHMLPKLLEVVDESR
Ga0211547_101021915F037480GGAGGVQVGDLVHMPGSIEPTTGIILRKKSDGEKHGLGRVQVYWIEDGEASWEPKKWLEVISASR

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