Scaffold Ga0211547_10090042

Overview

Basic Information

• Taxon OID: 3300020474
• Scaffold ID: Ga0211547_10090042
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1614
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.139
  • Long. (^o): -28.9598
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F053980	Metagenome	140	Y
F076077	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211547_100900422	F012114	AGGAG	MSNNNCVVYPRKNVWAVYDMHGEKIGEVGAMTEIEARQKVAEHVMIPFRLSHVEE
Ga0211547_100900423	F018906	GAGG	MKTCKVNPLKLNETRFEAETHKKEGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAIIKYPLGTDGEITGELIYDTQINRDLGCVDVIGWRDFGEVADILQQIRNYNTGEYMINE
Ga0211547_100900425	F053980	GGAG	MNGYELLAQYEKQIKECFTVPNNLLPKEFQDNRMVYDQVSLATIEKKCDERDRCTLSNFEEESIERAKRVQIYRDQIDKGEKISYLPR
Ga0211547_100900426	F076077	AGGAG	MFTEQEKLEITIDGLRNGDIFMNEDGVPVDEYGDPIFEDDQ