Scaffold Ga0211547_10062494

Overview

Basic Information

• Taxon OID: 3300020474
• Scaffold ID: Ga0211547_10062494
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1982
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.139
  • Long. (^o): -28.9598
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015092	Metagenome / Metatranscriptome	257	Y
F030088	Metagenome	186	Y
F039132	Metagenome	164	Y
F047679	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211547_100624942	F015092	GAG	MLDKIKSKLLTKLFVDWVNDEFDVELLEASKVMIQQRQDQVNFLVAKANPPEKIGFQY
Ga0211547_100624943	F039132	N/A	MDKSMESVMWQVVEDMNFNGRGHHKAGLYLTDESGLSVDGMRKVESFARRKCSALYSQLIDVTGVSDDSYDDLRWQIVANGEEFYNNITLEKAQSMIDNNEFTESFGYAFHKIDEMERTDEREQQLAYVERCRQGIHGSFYKALVDAFDKADNTNKMRLSLGFQEVFGDIV
Ga0211547_100624945	F047679	N/A	MTNLETSTAPIVADQEGDHYFMVGETVYYLNEFMKTLGNRDFDGVAHITNQGGIGIRRNWRDFDGVAHITNQGGIGIKVNEANEEVEYTIFTASY
Ga0211547_100624946	F030088	N/A	MGFKLNIVTKTKMSAKEMSRTLITLNQSEVFKMGRKTYVPFSAMSVVFNSKGATKQFDRDLDSITHPTKGKLFCLPKNVEQFIKVV