Scaffold Ga0211547_10025147

Overview

Basic Information

• Taxon OID: 3300020474
• Scaffold ID: Ga0211547_10025147
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3313
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.139
  • Long. (^o): -28.9598
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007259	Metagenome	354	Y
F007344	Metagenome	353	Y
F032626	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211547_1002514710	F032626	N/A	MNEENLQTKVEALQDNLKVKHDELTEIQQQLNVARNELANANKPTLSQDDAVVLVEKLQDIFQNALDDADTSDLSPEFSIDYGNEVRLDCIDMSAIEIHACDIESVLEEVFNIVSDNS
Ga0211547_100251472	F007259	N/A	MTISVTLVTDLIRTLKDNNTMIFDNKLRAEVKIQRDAIHQLLKYHLPKCDLTLIGDSEIQLTWSCSKYSIRSTSLECSMYGDWQFVETQDECNDNYYYSQDLKVDYMSPANEVVNALMKL
Ga0211547_100251478	F007344	N/A	MTSYEQRAYDALAMKLTEAGYAYENTSWDNDATASISVTCVRVVQSENEIDKVMKYEFQIYIPNCDYLDPDNEFFNTYAVTEEGGNVTTDFHRADEVVEHIQDCTRDVIFTN