Scaffold Ga0211547_10015652

Overview

Basic Information

• Taxon OID: 3300020474
• Scaffold ID: Ga0211547_10015652
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4312
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.139
  • Long. (^o): -28.9598
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002093	Metagenome / Metatranscriptome	594	Y
F009990	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211547_100156523	F009990	N/A	MSQNDETKKFAKSYADQTMAKGTFDQVRMINNDLANMLAIVAGDPEITKKLKNKNEAQAMRQRQSVPVMALRRYLRSYEDHFRNLTTLERALNINDGNLRNIRRAVANYSKLDSKTKIQTLHRLQQQLQAKLPNTDILRKFKEV
Ga0211547_100156526	F002093	AGGAG	MAYDATLPAGGPGNFVSPNSAHEADGVEVDFITVDYISDVSGEVTNPRASAATGALELAMQAIQNQGVNILGKGVLSNSDTEQTYMVRRDSLDTISSTTTVAAIATAIQGLNAMTPDKVTANISSATAADRDMGDTSVGA