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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020474 Open in IMG/M |
| Scaffold ID | Ga0211547_10014480 Open in IMG/M |
| Source Dataset Name | Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4510 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_151 | |||||||
| Coordinates | Lat. (o) | 36.139 | Long. (o) | -28.9598 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004439 | Metagenome | 438 | Y |
| F011337 | Metagenome | 292 | Y |
| F036918 | Metagenome / Metatranscriptome | 169 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211547_100144801 | F036918 | AGG | VKSFKRYLTEIGVNPFKIAGKPAWTESLSTMLFDLPRAGLKDLKIPLSPAIMRRIWPKPVRTTVFHLTDFDGLKKLKRMQGGKRSISAFFNIDDIVIQTGIKSEG |
| Ga0211547_100144803 | F004439 | AGGA | VKTFKGYLNERAGSSLSDLLFMPFVKSYDRLLIPISSSMYKRIWPDTLRATVFHTTDGDGVRNIVKLQGKKRQISAFFSMQGRYMEVGIVTQGGVHSVLEMDADVILSAEGDVMSRVDRVGRRYTTTSDLEEASRFTDFKKVEKDLETMFSKLVNKYLKRGEFQDSMTDFQLWHQAKRKVDGKTMRLMIKDYLDGMEEVIKKNIKTFSEAMLSYAKKRETKKSWDEQVVNNFKVKIAHFFKLKLKDGKNSLTPEQDELMQFSKSQGWKVKVWDTPTDLETYTKEVAKKELGK |
| Ga0211547_100144804 | F011337 | AGG | MKSFKQYITEIGVDPFKIVGAPAWTESLSSLLFDLRGGGLKNIMIPLSPAIMRRIWPKPVRTTVFHLTDEGSILKLKGMQGGKRSISAFFNIDPYIISSGIKSEGGFIVEMDADILIASQDDLSSQPDKTGRRWVTFQSLTNSPTDPMPGLGGKAKLRGMEKDIEKMLWKIIKTHSMYPNQTEPTVAAAWVELGDERHYYKKILSLIIRDYLDGMEGVMKKNSRALGSLLTAYTKKRIQDEDPDSGDRPYWDELVVNNFKIKMVHISPLYADEYQDAEDIEGLPFKIYDDYGDMTDYIDRKIQRIKL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |