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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020474 Open in IMG/M |
| Scaffold ID | Ga0211547_10000893 Open in IMG/M |
| Source Dataset Name | Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19161 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_151 | |||||||
| Coordinates | Lat. (o) | 36.139 | Long. (o) | -28.9598 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011254 | Metagenome / Metatranscriptome | 293 | Y |
| F036782 | Metagenome / Metatranscriptome | 169 | Y |
| F052580 | Metagenome / Metatranscriptome | 142 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211547_1000089315 | F052580 | AGGAG | MPKITVAHGCSFTRYKWDCWPKFIPWFDGGLHMHNKGRSASGNETISRAVINSAMKHEEITHMYIMWSAFDRYEVITLDEGVDHLEGRITYRVWDDDFKWSTWFGGHRLPTKHDYYRRHFWNEEHQYYRTLENILRTQMFLDKKKIPYTMMLFNKHVLRDKPYSESERALGNEIDWTKFLFYKDRQGLWEFAEDNYKEYYIPGETHPPPIAHYHWVKDIMFKSDVLCPPDEYKKLKNYFEGKDGRS |
| Ga0211547_100008938 | F011254 | N/A | MQVQIFTKVDASFECIGLNGNTISQSGIINMPQSWHKCYINLHRNDITDIKIGGESIKHCLNSGNNTIDGYEIWLHGDPAQYFSRISECIAQDDLLTFKSLEDKYLITESWNTQVDGDFIPTSVKQFFATGEGPHWYHKDDFHNLPYIQHDGDVDTDLDLDEDLQFTDTKFYGQGQCKSLKAQPVLPTIKLEQIKNKKLRDVMGSFGYTEILQMQYVELQPNSVLPIHMDDFTYEDGKSIIDGPTQLYCVLSGDYKDIKFKFKNVGLIDVSKPIFINNRRFVHSLVYTGSIPRGVLLAYGIRQAR |
| Ga0211547_100008939 | F036782 | N/A | MDIRSLKQQSELSYDIAVAKRNALEKANSRQVLAYNGSLFRADPQTICLVRTLKETHGTFFVLDTNNNPVEIKDADGFLKQLIARNQEALNAYHQLYETFTRKGD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |