Scaffold Ga0211625_10430140

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211625_10430140

Scaffold Ga0211625_10430140

Overview

Basic Information
Taxon OID	3300020473 Open in IMG/M
Scaffold ID	Ga0211625_10430140 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	660
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_122
Coordinates	Lat. (^o)	-8.9632	Long. (^o)	-139.2276	Alt. (m)		Depth (m)	115
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006347	Metagenome / Metatranscriptome	375	Y
F026404	Metagenome	198	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_104301402	F006347	AGAAGG	MVDKIKQLLNTLEQEINDGYNTLPDYQTNDEGKTYINGAQTTLYELQQQVLELEQGLRLGKNFSLLGKEK
Ga0211625_104301403	F026404	AGGA	MKIYGEILEIKNVTEGYTKEQIEQNIEQFTEDRNEALYELYEMKRETSAFNESGNKYGYENLLDDTDFFTPTDFTDTYSVKGFEDEQVVEILEGMI

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