Scaffold Ga0211625_10143833

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211625_10143833

Scaffold Ga0211625_10143833

Overview

Basic Information
Taxon OID	3300020473 Open in IMG/M
Scaffold ID	Ga0211625_10143833 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1310
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_122
Coordinates	Lat. (^o)	-8.9632	Long. (^o)	-139.2276	Alt. (m)		Depth (m)	115
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052941	Metagenome	142	N
F061923	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_101438331	F052941	N/A	MRDMKTYTLYWKNEDTNRVSSKDFTSEPGVDHSAMDKALELAQEADTNMWPWILEEDGCTVAHGWGGDMLGTYRFQG
Ga0211625_101438332	F061923	N/A	MRPETKANIAQQGAEIASIRGTLQALSESWGADAKYLQTRIADMEEKLTNVQNTLAEIEWSEEVDWLGKLNE

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