Scaffold Ga0211625_10078810

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10078810
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1926
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F010572	Metagenome	302	N
F056142	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_100788101	F056142	N/A	IGCDELMHSVVENLTPSDIFRWETPLSVSKMIKVKIIENTVNAVLMEHNLDSLVDEEGFPQKAYIEYHDDKLDFKPNFRRITIYTYHPKWIPMPEGAEPIGYEVAYQLSRDFKKDIYEKMDSHKNAYADMVTQ
Ga0211625_100788102	F004336	N/A	MRFIRNMLFGTGRYPSTMGAGGQQDVEFCRYLEWVWFKRCVWLLGISFAFGGVGLYVGYYYDEVVKDYGMTIWGVAWLYNGFLMFVLAVSIILSTIKALVVKAFVSPEVQVGQAATRTAQMMRKGGL
Ga0211625_100788107	F010572	GGAGG	MSGYAGSPAGYLNPVAVDKIQHPDYDAKAAENITMRVCQYLYPVLKNSVEMLEALCKETDVQVPTDLADNMEFLKTVYNTQIDWHPRTMYGDEAAEELNARLTLHEE