NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10038102

Scaffold Ga0211625_10038102


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10038102 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3086
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012463Metagenome280Y
F027156Metagenome195Y
F029745Metagenome187Y
F048570Metagenome148Y
F058991Metagenome134Y
F081218Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0211625_1003810214F081218N/AKWVGGSSHNLQGIIVDTRDIRDLGPHLEVKVIWETRGLGSLKQKPGGSWQRAACVKVISSVEPEDANR
Ga0211625_100381023F012463GGAGVKIGDIVKLIEKPAVDWMENYRDKTFQVLDFPTETGVELKMIGSVPDWVWIIGKSNLQLAEEPIDGN
Ga0211625_100381024F048570AGGAMKIGDLVRCRPRNERENYDEWLGLIIAEPPFAKTVAWANSTDGTVEIVNHPPVELVLVNESR
Ga0211625_100381025F027156GGAGMIPKVGQLLRWYDKFTLERDNPHHDVGIVKEVQLEGENFFGDDEYQYVVVVDWCKGPHHSEHDQEEWEESIYQGEIVVVE
Ga0211625_100381026F058991GGAGGVQTHADLRIGMLVRWNGDDTEGADIDELGIVTKLPGEDWHGYYHIAWALSDTVSHHSPEMVEESLYDGQMEIVQ
Ga0211625_100381027F029745AGGAVASKAPRIGDLVRSRTLPTHAAGYIVGTEGIHVWVRFLDDAPKGESWDVYARRDTLEVISRANSR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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