Scaffold Ga0211625_10014923

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10014923
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5720
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022899	Metagenome	212	Y
F030779	Metagenome / Metatranscriptome	184	Y
F051197	Metagenome / Metatranscriptome	144	Y
F058203	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_1001492314	F058203	GAGG	MSCLHNEALLETLFEEVLAEYPHLDEEACESIAKARFEDYSN
Ga0211625_100149235	F022899	AGGAGG	MEQMYTRHGRSPVSSKHLEALNRLYDAYNQPDNSEGDRRFYWAKIQQLTNSLTE
Ga0211625_100149237	F051197	GGAGG	MKSMTKYEWSEEFYKELVIDYNYRFPKFMEISYPNHSEESIND
Ga0211625_100149239	F030779	GGAGG	MQIQSQKGSMVLDYYPTKTWDSVKLHDKVLKVLTFRGQTIIKKVISTQDYINEVYDRIHNFKYVDNKVDHSNCYQFVSLKEG