Scaffold Ga0211625_10010379

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10010379
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7300
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039334	Metagenome / Metatranscriptome	164	Y
F043972	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_100103792	F043972	N/A	MISKNQTTSNIVFYSYKKNEHDHINDHELKRFDHSIRSLREFNDEIPVYLFCDDPAFIPLYFRLNYNVNVLPFVDEFDHTMLSAWSIHRWYNLRYFKDQSFNILYLDSDTIFYDNVQYIFDTYSRYDVYGREEFGFRHDPNTGGGKNIRKQLKAVDDAIINLGGKTEVNKYCCGVILLNNNIHIKIIDKLDELTELMNIFKNGAQLMPIPNSRIVDQYAVWIIMSRLSVLCGMFGIQDVTQGYIEEKHKEFFNPVILHYTTKGEQKLAESNNRFSNLLRDVDKLGGQIDPYHIL
Ga0211625_100103793	F039334	N/A	MPKDPLDFIIVCFLWAEWFAQKCLCLPYKIYIKYDYWSHNRRVAAAAKYAEENPYTFPKSPFDND