Scaffold Ga0211625_10008175

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10008175
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8600
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065100	Metagenome	128	Y
F088745	Metagenome	109	Y
F098231	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_1000817513	F065100	GGA	METAWNSSIMDAIQARILKLSKEMLDKLKNKVLGDSQTEKFEVGEIVMWPGWQHTDENVVRNYKYGVLLSIYTGILDVREIKIAKILPFGHSNPINISLILVKKSDLED
Ga0211625_100081757	F088745	AGTAG	MSKELDTKIWLSLDKIEHQLRRVAYLATTEPYQKKIYEALDLIKEAKEEVEKRLDK
Ga0211625_100081758	F098231	GGAG	MEVGDLVKQRSVGVAIISEFIRSSLNMGMIGVVKIVHNKTQYSYDGRNRGDITVVWSNGKEETLPEIYLEVVNDEQGT