Scaffold Ga0211625_10001941

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10001941
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21240
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010027	Metagenome	309	Y
F024571	Metagenome	205	Y
F055207	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_1000194115	F024571	GGAGG	MDLNVDVIDNETGEIYREGVLLANAHIFITKEMGKIVREEKYEIESDSICGIGGPMEVHEIYVDFPEETLKRELSANAIIRAREFWQYENGGGQVR
Ga0211625_100019413	F010027	AGGAGG	MATTANSKYGFELTSSEVLAAHPKSGLSTVVISGICTNPDGVSFNFVATNNLDQRYPDRFKVNWAGNQPRMPRVVGYGLAEDVTAAGHKVAEKLFFTRGARIAIAGRCKALWPRGKQRRYAAVAAVKAA
Ga0211625_1000194142	F055207	AGGAGG	MGHWNPHENPKDNKGFESVADIVCDIADRALGGWDDFTDDIRTYPLEILNLYKSEDCPEPLNEEVYQQVLREHPERVHRAIHRRICSRLY