Scaffold Ga0211625_10001208

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10001208
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28361
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001711	Metagenome / Metatranscriptome	648	Y
F020921	Metagenome / Metatranscriptome	221	Y
F047687	Metagenome / Metatranscriptome	149	N
F073577	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_1000120833	F073577	AGGAG	MKVKMFNKEWEVNNPTYKEKRELWKINTMTFEGDKLNQDNYFKLLDKVEEISGLQPEDYVNQKGDPLNMANIDSLLQKIFLSYIGQSDDSKKE
Ga0211625_1000120847	F020921	AGG	MALPKVPTTNVGIYNHLRVSTDCNETTNLSLASLCNGGDIGGIDHTFGGAGGPAKDFDVIGGTNNPITTTADSTNLYDDVIGVAPYNLANCIGGQYT
Ga0211625_1000120848	F001711	AGGAG	MAKKIAEKAQEQAQSSVKMVEIKHLRSMKDEAGKDVSVVDWTESKDVDEAISQAEAQLVDAEAKVTELKADIVEYKKIKG
Ga0211625_100012085	F047687	GGA	MKARDIANFTKTNWGQLASHARGLIVKDMNDGVMQNGIKKYNRNKASKEYAKKKATGALGKFRKSDRVTMLLSGETARRIRPEGKKDRAILVFERGDIVDANEKRGYVIADLSGKNRDKSVDFLQRIVDRNVKKYESKPVKIKIGK