Scaffold Ga0211625_10000885

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10000885
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33990
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019329	Metagenome	230	Y
F020626	Metagenome	223	Y
F020711	Metagenome / Metatranscriptome	222	N
F033214	Metagenome	178	Y
F057429	Metagenome	136	Y
F072847	Metagenome	121	N
F077385	Metagenome	117	Y
F099423	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_1000088510	F019329	AGGA	MAEIGQFIFCNVSPIVVYLLKSFFYFVTGDQTGATVTQLTIKLYKSMTYYVSPMCHYSRRRKALFCFLEIKMSKYSTILRGFAW
Ga0211625_1000088515	F020626	N/A	MNEPIIKEVNVHDELKRARNAFYDAMFEGNEEEMCAANNAVGYYESMDGVSCPEYPGF
Ga0211625_1000088518	F033214	GGA	MTIKVWLLYLLISMPGMPSVKNNSFLYPNEEECMQALVDYLNIYESKSAEYKAGLKTTGYCLPFDAFPIQGMNIL
Ga0211625_1000088526	F077385	N/A	MSSKHVWQWYWAYDWLNQKYKAIYFGPRLSWMKLFKKRKSDKKKVRKIRASSK
Ga0211625_1000088528	F099423	N/A	MLFKCQIKMTEDFYDHMKKEQDILDASYRESLRQKHERMAVWDPGEEKAVFWEIKTFIIARYRALREWAVCLYPGKRLK
Ga0211625_1000088530	F057429	N/A	MKNLRMNARVFVEYDKSSVRPGPKFKCSICGKWFKKLLYWLDKKFNPDQEYKMIFLCGPKCATENHDRNNS
Ga0211625_100008854	F072847	AGGA	MTKSDFKTRVGMGFFSCKWINNKGEVSVIKRAILGQYAWRHTNLATRNSIREHNNYVLAYRVGNGLDANHRRWANINTNNILEINGNRV
Ga0211625_100008855	F020711	AGGA	MTENLPKVITSNGSDITPLLKEMIDHLKLEKELGNVDKLADVKVPMSSSADWKLICGVLCNSIVEWAGQNRNNGGLDLIHHMQSDIGYLVKRLGLVE