Scaffold Ga0211625_10000052

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10000052
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 143550
• Total Scaffold Genes: 192
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 168 (87.50%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003330	Metagenome / Metatranscriptome	493	Y
F005524	Metagenome	398	Y
F012401	Metagenome / Metatranscriptome	281	Y
F013357	Metagenome	272	Y
F021532	Metagenome	218	Y
F028360	Metagenome	192	Y
F032335	Metagenome	180	Y
F036923	Metagenome	169	Y
F042854	Metagenome	157	Y
F058991	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_1000005214	F042854	GGAG	LNEYQKIEKYTRHRMRELRGETDPVTRPDPFIERYTARRIRELRLENEMKERKVNLDNVALGGYTVATMEAYSGKS
Ga0211625_1000005215	F013357	GGAGG	VARARYIPGALVEARNSTYGKGFGIIVRGPTMDTKAQGRYRDLEKPQPWFVVHWFEKPGNVDSYYMRLGKGQVQMTKNQLRLVRKK
Ga0211625_1000005224	F028360	GGAG	LTNTLQRGNIFIMKDYKPHITMLKVELKNEEENVLTIDMSDDFVKWFKLEHNLKRWAPKQFKQWLLMVLQGDKKS
Ga0211625_1000005231	F032335	GGTGG	MKVSELKPGMLLRFKEPRIYKYLRDSGDDHWLDISVPHKNQTLKWVQLGQPLMIYLGQKKMTDPSYYGGFFNVREVSIEGTVCWMWPDAWRHVEAV
Ga0211625_100000524	F021532	GGAG	MSMKKEVIVLKDKWLTNATDLPEARAIEMTEVAEGTYMDSPFPLAIDAQKRLLELIYNRKSGIITRQELIDVLFNPEGAPGGQIIRCRL
Ga0211625_1000005241	F005524	AGGA	MDIGDKVQHFGTGSVGTVIDSSYEVETPFQQLCVQWEDELAPHRDSWERREALSIIPHEPYDFTIND
Ga0211625_1000005249	F058991	AGGAG	MFGCAFLIMQLRASPTTFTPGATLWRFCPMQTHADFRIGTLVRWHGGYIAYERADIDELGIVTKLAVNREGHYHIAWAISKTVSHHSPEMIEESLYQGQMEIMQ
Ga0211625_1000005258	F012401	GAG	MSEQPPEEREMLSGILSLEKAALQRLTEDRLASGSLGPEVEEMLFEAGVYWDTLNQEYFSIDAFQRETFERLAAEYVSQNDA
Ga0211625_1000005266	F036923	GGAG	MIKFELTDDEVTTILVALDNYGDAKRLEWADSRNDADLTEAGSAEWCWQKLFDAQQQFRNSIADAVGEGEPDNPRNSADVDPFDFNGLEF
Ga0211625_1000005270	F003330	GGAGG	MRKQDAWGNPICRVGDIVKSITLEGDPGTVTRIIQVNANGAYVVQVKWFSWNGGCTSEEYVSDIKIISEV