Scaffold Ga0211579_10379367

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10379367
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 802
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040345	Metagenome	162	Y
F094103	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_103793671	F094103	N/A	DELIDIMKECNWIWKKRQKVKEIGWTEYNSIDRKIEESLRGGRKIEAIKTYRKHRIDNGTDCSLKDAKVYIDKLQVKMGLDS
Ga0211579_103793673	F040345	N/A	MIKNTEHEDIITYILIGIGLGVPIGFVLKVFLDTYTLIESLPL