NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10197216

Scaffold Ga0211579_10197216


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10197216 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1171
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037480Metagenome168Y
F084211Metagenome / Metatranscriptome112Y
F099989Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0211579_101972162F084211GGAGGVQVGDLVMSNGHLAIVICVNAHETLIKWLDDGIVEDADNYTIGLELVSASR
Ga0211579_101972163F099989GGAGMKIGDIVKVIYDGTVGLIVRVEGGPWDTPWVWLNTGESFRSDKLEVLSASR
Ga0211579_101972165F037480GGAGGVQVGDLVCMPQSVEPSTGIVLRTKPDGINRATRHTRVKIYWIEDAEVSWEPVKWLEVLNASR

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