Scaffold Ga0211579_10117075

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10117075
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1587
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F018286	Metagenome	236	Y
F057352	Metagenome	136	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_101170755	F079212	GAGG	VNDDEKKLIDSCIESHYNMIKHHRKAILDLERKKIKERDWCEECFDFEIINESGRSDKV
Ga0211579_101170756	F018286	AGGTGG	VTVLTTFILLGMVDSHDEYFATVELNTNPASNGGPATAVMPVNAFPCEIYEGRVFYIVKLHDNQDAVIICQEDAKSERRREETD
Ga0211579_101170757	F010950	N/A	MMKIWVVRQTCLYDQETYVSSHLTEKGALITAIKIVREDMCDGFDEDELEDMRPGLPHHPEEDLMQYDSKQLRGMIEDWWEYSWDINEQAQYQIYETQVEA
Ga0211579_101170758	F057352	N/A	MFTSIHLTEKGCALACIADVLEFLGVDNEEEALQAMNDSYTYRDTDGEQTEAFEWDQQKMKEMSSKDLWKIFGDWTELCWDRMSDRSYYIDATPQMVQA