Scaffold Ga0211579_10091267

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10091267
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1834
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031695	Metagenome	182	Y
F050677	Metagenome	145	N
F057668	Metagenome	136	Y
F106087	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100912672	F050677	AGGA	MNGILNIPYLIDDAHGWIIVTRQDLRKARLHPDDFPKAYRTKCEELFALEEDCEMPKLLDKLNSNGVIFQINEKRISHDDKDNPRNWRQ
Ga0211579_100912675	F031695	GGAG	MTINFIEEWICDGCGGIFDKTEMVESIQLPYYSCQPCEDELKKEMEKLNDN
Ga0211579_100912676	F106087	GGAG	MTIKIPTPTFLEIQSDLADWLMSTELGQDVYSTMLEMHNNTESYTDEGQDIFNEKYDDVEAFLNNYFEKED
Ga0211579_100912679	F057668	AGGAGG	MGRKSKWELERDKHNALRKKAMKSLTQDQLTAIKFTHDTLSNALDMLVECNDLYLSDINKLSDAFWKLKNEFNMEEKNNG