Scaffold Ga0211579_10046357

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10046357
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2712
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F029594	Metagenome	188	Y
F052260	Metagenome / Metatranscriptome	143	N
F053978	Metagenome	140	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100463572	F052260	AGGAGG	MFVILATKPLNDGTKGFRFNFFGKKGIVRQRKLQSNGIKFTKGDCMNAYHFGKTTIYTEQPVNKTTARKFCHLAG
Ga0211579_100463574	F004493	GGA	MQNSVTKNNALDFTNDQWNQLIEGNGLLLMWFIEWNKRDKDNLVQIQDFFKQKYNISAGCDPWPMKNAKIALDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHVVRMD
Ga0211579_100463575	F029594	GAGG	MLPDEMEAEKNRKLLLSQADTIEILKRNVRDLQEQLTAANIRIKQLKDDNWELRRKVTDAYQ
Ga0211579_100463576	F053978	AGGAGG	MHINETTKQMIREIVVELFKEVASKQTFGVSDEVIQLDEHLHDWVGAKIDKYDVKVYGARLEERY
Ga0211579_100463578	F005813	AGGAG	MKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPTKEAMSWFRWAHDCMLRGQYEDAKEMLRKGLIDDKESN
Ga0211579_100463579	F103094	GGA	MTKKATEKLNIEVTLSSDNSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWQDDRAITRS