Scaffold Ga0211579_10023909

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10023909
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3963
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F028360	Metagenome	192	Y
F039585	Metagenome	163	Y
F062279	Metagenome	131	Y
F064629	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1002390912	F062279	AGGAG	MYERMKALLRRCVDLIVAMTLVSAMLAYLMINSLIATKVINDLRLDTYVNYETGFGVVMLVLLLGWGPVWLMRTLDNHR
Ga0211579_1002390913	F064629	GAGG	VTRLYQDTAPELVDHPERKGLRNFTWTNDAINDWEEIWHELWHFGYKWEWQNADRYARRRGETFNLFAVHNDAVRLDMAIPLPGVVIIEEIREKILDDDNTAHELDQLVGTIDRWLKTYYAP
Ga0211579_1002390914	F013357	AGGA	MARTRYIPGALVEARSSKYGKGFGIIVKGPTMDTRASGRYRDLENPQPWFTVHWFEKPGSVDSYYMRRGNGQVEMTKNQIKLLRKK
Ga0211579_100239094	F039585	GGAG	LLCLLSVLCVRISTLKAQEINAEKCLEYFTEIVEVQKFRQMLQYGAEEMIKRYERGNLTKKELDMTLAVWHNTESRLREKVTKIYDTAYAEKCFDSTALPKGKK
Ga0211579_100239099	F028360	N/A	MKDYKPHITMLKVEIKNDDESVLTVDLSDDFVQWFKVTHNLKRWAPKQFKNWLIKVLEGDTRS