NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10023497

Scaffold Ga0211579_10023497


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10023497 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4003
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024198Metagenome207Y
F043972Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0211579_100234973F043972AGAAGGMNIVFYSYKKSIHAHINDHELKRLDHSIRSLRDFNNEIPVYLFCDDPAFIPPYFRLNYNVNVLPFVDGFDHNMLSAWSIHRWYNLKYFEDQSSNILYLDSDTIFYDDVQYIFDTYSRYDVYGREEFGFRHDPNTGGGKGIREKLTRVDQAISALGGKESVYKYCCGVILLNNNIHTKIINKLDELTELMNIFKNGAQLMPIPNSRIVDQYAVWIILSRLSSTGGMFGIQDVTMGYIEEKHQEFFNPVILHYTTKGEQEFAESDPKYNNLLRDVDGLAGDIDPYHVL
Ga0211579_100234977F024198AGGAMTDNYKVVAYTPSRDRYPVYKFYNEPEDWSCNGTVKISCKDGKVDVTIFEKDSIKVHKLEVYSDDGPVGAKLTEQCEHPA
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