Scaffold Ga0211579_10021789

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10021789
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4175
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F034211	Metagenome	175	N
F086310	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100217891	F086310	N/A	MQVGDIVKHFLTEQIGIVMNIDDAGSSLAAVHVLWTTQGESLFGPGGKEWCSKNSLELLTTA
Ga0211579_100217892	F034211	AGGAGG	MAYLKKDDLVIIPAASGANIQARVVDMQFRRFRRTWKDKTTGENKSRWKSVPYAVCECFLGAPVGTEFVIPGYKLKNETKDGEKLLVLRNEYAAEFGGPWIEKMIEDSRAKREVAQ
Ga0211579_100217899	F008590	GGAGG	VKVGDLVTYAFQLPRWRKGLSVHVGLIVETGKYTGNCDVKVSWMGKRKAEVRTEGTQHLALVPDLS