Scaffold Ga0211579_10017165

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10017165
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4755
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004768	Metagenome / Metatranscriptome	424	Y
F012919	Metagenome	276	Y
F022974	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100171653	F022974	GAG	MENNETYYIAKLSKKGKHLSSEIHETLEAARLWAMKETKLLVSDTFLRKCKADDVVVEIDEHFFGYEISSEEIFKNGMKI
Ga0211579_100171655	F012919	AGGCGG	MSESIKMTRSELNEAIVNFLANGGKITKLPDGPDYRFQPYGVKVTPGDPKVDVTITETPTTKQQISYVEKHSL
Ga0211579_100171656	F004768	AGG	MKHATIEILLRSEKIFGSETSGEYFVREYEDNVEMSGSFYKTMNEAEAHVRKYQNDEK